run_metadata: 68203
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68203 | SRR17658920 | SRX13826962 | SRS11706207 | SRP355728 | PRJNA798522 | Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish | PRJNA798522 | Other | Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity | Z1LF duplication 1 | Zincone1 liver female 1 | strain:AB|dev stage:adult13|sex:female|tissue:liver13|BioSampleModel:Model organism or animal | Z1LF duplication 1 | Zincone1 liver female 1 | Zincone1 liver female 1 | Zincone1 liver female 1 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP355728 | Z1LF1_2.fq.gz Z1LF1_1.fq.gz | fastq fastq | 6782491200.0 | 22608304.0 | Z1LF1 1.fq.gz | 0:150 1:150 | A:1789405575;C:1606823947;G:1605287980;T:1780124329;N:849369 | 150 | 150 | 1789405575 | 1606823947 | 1605287980 | 1780124329 | 849369 | SRX13826962 | SRS11706207 | SRA1358625 | Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center | Chinese Academy of Fishery Sciences | 2 | 0.96811 | 0.9688 | 0.02477 | 0.02493 | 0.88345 | 0.88316 | 0.13943 | 0.13875 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | bulk | bulk | China | 2022-01-19 | Adult | Adult | Liver | Liver and Biliary System |