run_metadata: 68199
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68199 | SRR17658728 | SRX13826753 | SRS11705911 | SRP355720 | PRJNA798511 | Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation | PRJNA798511 | Other | heat treated zebrafish | C60d ZHT | strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:60dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal | RNAq of zebrafish | C60D | C60D | WT zebrafish | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | BGISEQ | BGISEQ-500 | SRP355720 | loader:fastq load.py | 10921407600.0 | 44923977.0 | C60D.7z | A:2992232295;C:2470688717;G:2440861228;T:3017432565;N:192795 | 2992232295 | 2470688717 | 2440861228 | 3017432565 | 192795 | SRX13826753 | SRS11705911 | SRA1358616 | Hunan University of Science and Technology|School of Life and Health Sciences | Hunan University of Science and Technology | 2 | 0.93932 | 0.94095 | 0.06489 | 0.06559 | 0.77871 | 0.77759 | 0.56384 | 0.56447 | 150 | 150 | B | B | biological fallback assumption | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-12-09 | Juvenile | Juvenile | Whole Organism | All anatomical structures |