run_metadata: 68197
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68197 | SRR17658726 | SRX13826755 | SRS11705913 | SRP355720 | PRJNA798511 | Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation | PRJNA798511 | Other | heat treated zebrafish | T45d ZHT | strain:AB|isolate:35|breed:zebrafish|cultivar:TEST|ecotype:CHINA|age:45dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal | RNAq of zebrafish | T45D | T45D | heat treated zebrafish | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | BGISEQ | BGISEQ-500 | SRP355720 | loader:fastq load.py | 20230560300.0 | 67435201.0 | T45D.7z | 0:150 1:150 | A:5444816209;C:4663007584;G:4631943733;T:5490408754;N:384020 | 150 | 150 | 5444816209 | 4663007584 | 4631943733 | 5490408754 | 384020 | SRX13826755 | SRS11705913 | SRA1358616 | Hunan University of Science and Technology|School of Life and Health Sciences | Hunan University of Science and Technology | 2 | 0.88041 | 0.881 | 0.04485 | 0.04492 | 0.72163 | 0.72236 | 0.52232 | 0.52307 | 150 | 150 | B | B | biological fallback assumption | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-12-09 | Juvenile | Juvenile | Whole Organism | All anatomical structures |