run_metadata: 68119
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68119 | SRR17600936 | SRX13769738 | SRS11649741 | SRP354867 | PRJNA796827 | Transcriptome sequencing of LGG fed zebrafish | PRJNA796827 | Other | We aimed to reveal the relationship between biofilm and intestinal immunity. | CON2 | CON2 | GF2 | strain:not applicable|isolate:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:Danio rerio|collection date:2020 06 20|treatment:germ free|ID:2|BioSampleModel:Model organism or animal | Danio rerio | GF2 | GF2 | con | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP354867 | GF2_Clean_Data2.fq.gz GF2_Clean_Data1.fq.gz | fastq fastq | 6890754909.0 | 24743699.0 | GF2 Clean Data1.fq.gz | 0:139.24 1:139.24 | A:1835444319;C:1603941435;G:1619476893;T:1831892000;N:262 | 139 | 139 | 1835444319 | 1603941435 | 1619476893 | 1831892000 | 262 | SRX13769738 | SRS11649741 | SRA1356218 | zhejiang university|School of Animal Sciences | zhejiang university | 2 | 0.95084 | 0.95124 | 0.09039 | 0.08916 | 0.66746 | 0.66663 | 0.48741 | 0.48096 | 141 | 141 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-01-13 | Undetermined | Undetermined | Whole Organism | All anatomical structures |