run_metadata: 67844
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67844 | SRR17386284 | SRX13560357 | SRS11453096 | SRP352979 | PRJNA793147 | Danio rerio Raw sequence reads | PRJNA793147 | Whole Genome Sequencing | normal RNA seq of Danio rerio | ck 1 | strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:not collected|sex:not determined|tissue:Gill|replicate:replicate=biological replicate 1|BioSampleModel:Model organism or animal | RNAseq of Danio rerio | S123 | S123 | normal RNA seq of Danio rerio | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP352979 | Gill_con1_Clean_Data1.fq.gz Gill_con1_Clean_Data2.fq.gz | fastq fastq | 5140938459.0 | 18343430.0 | Gill con1 Clean Data1.fq.gz | 0:140.14 1:140.12 | A:1372431897;C:1190016635;G:1209788123;T:1368690050;N:11754 | 140 | 140 | 1372431897 | 1190016635 | 1209788123 | 1368690050 | 11754 | SRX13560357 | SRS11453096 | SRA1350370 | Northwest A&F University|College of Animal Science and Technology | Northwest A&F University | 2 | 0.92642 | 0.93067 | 0.06487 | 0.06429 | 0.72529 | 0.72403 | 0.51099 | 0.51071 | 141 | 141 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-12-30 | Undetermined | Undetermined | Gill | Respiratory System |