run_metadata: 67673
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67673 | SRR17247006 | SRX13426045 | SRS11327038 | SRP351072 | PRJNA789095 | Danio rerio Raw sequence reads | PRJNA789095 | Whole Genome Sequencing | normal of RNA seq of danio rerio | D1 | isolate:not collected|age:3mpf|sex:pooled male and female|tissue:scaly skin|replicate:replicate=biological replicate D1|BioSampleModel:Model organism or animal | RNAseq of danio rerio | S341 | S341 | normal RNA seq of danio rerio | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP351072 | d1_R1.fq.gz d1_R2.fq.gz | fastq fastq | 5804251200.0 | 19347504.0 | d1 R1.fq.gz | 0:150 1:150 | A:1651195300;C:1234370632;G:1251804070;T:1666750262;N:130936 | 150 | 150 | 1651195300 | 1234370632 | 1251804070 | 1666750262 | 130936 | SRX13426045 | SRS11327038 | SRA1344321 | shanghai ocean university|college of marine sciences | shanghai ocean university | 2 | 0.83287 | 0.83611 | 0.08737 | 0.08841 | 0.7498 | 0.75162 | 0.64045 | 0.66425 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-12-16 | Adult | Adult | Skin | Surface Structure |