run_metadata: 67580
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67580 | SRR17224791 | SRX13404150 | SRS11307154 | SRP350669 | PRJNA788440 | Danio rerio Raw sequence reads | PRJNA788440 | Whole Genome Sequencing | Danio rerio Raw sequence reads of eyes and skin | zebrafisheye | breed:AB|age:30days|sex:pooled male and female|tissue:eyes|BioSampleModel:Model organism or animal | RNAseq of zebrafish | eye mut 3 30dpf | eye mut 3 30dpf | RNAseq of eye | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina NovaSeq 6000 | SRP350669 | eye_mut_3_30dpf.R1.fastq.gz eye_mut_3_30dpf.R2.fastq.gz | fastq fastq | 7370863566.0 | 24406833.0 | eye mut 3 30dpf.R1.fastq.gz | 0:151 1:151 | A:2035593457;C:1650415961;G:1678944830;T:2005897248;N:12070 | 151 | 151 | 2035593457 | 1650415961 | 1678944830 | 2005897248 | 12070 | SRX13404150 | SRS11307154 | SRA1343194 | Huazhong Agricultural University|College of Fisheries | Huazhong Agricultural University | 2 | 0.9169 | 0.91717 | 0.11546 | 0.11616 | 0.66249 | 0.66312 | 0.47895 | 0.47697 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-12-14 | Juvenile | Juvenile | Eye | Sensory System |