run_metadata: 67546
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67546 | SRR17191195 | SRX13373012 | SRS11277336 | SRP350168 | PRJNA787741 | The effects of tire wear particles on zebrafish eyes | PRJNA787741 | Other | The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles | LT2 5 3 | LT2 5 3 | isolate:larvae|age:5 days|sex:not determined|tissue:whole body12|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio larvea | LT2 5 3 | LT2 5 3 | The cDNA librarie was constructed from zebrafish larvae treated by low concentration tire wear particle leachate for 5 days. The libraries were sequenced using an Illumina Novaseq 6008 platform. | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP350168 | LT2_5_3_1.fq.gz LT2_5_3_2.fq.gz | fastq fastq | 6828759900.0 | 22762533.0 | LT2 5 3 1.fq.gz | 0:150 1:150 | A:1812242219;C:1614183257;G:1611383597;T:1790226183;N:724644 | 150 | 150 | 1812242219 | 1614183257 | 1611383597 | 1790226183 | 724644 | SRX13373012 | SRS11277336 | SRA1341542 | Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES | Chinese Academy of Sciences | 2 | 0.95078 | 0.94825 | 0.08641 | 0.08506 | 0.66306 | 0.66316 | 0.49287 | 0.49262 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-12-10 | Larval | Larval | Trunk | Surface Structure |