run_metadata: 67542
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67542 | SRR17191191 | SRX13373016 | SRS11277340 | SRP350168 | PRJNA787741 | The effects of tire wear particles on zebrafish eyes | PRJNA787741 | Other | The RNA sequencing data provides biomarkers for the phototransduction dysfunction induced by the tire wear particles | CK3 | CK3 | isolate:larvae|age:5 days|sex:not determined|tissue:whole body3|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio larvea | CK3 | CK3 | The cDNA librarie was constructed from control group zebrafish larvae. The libraries were sequenced using an Illumina Novaseq 6002 platform. | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP350168 | CK3_1.fq.gz CK3_2.fq.gz | fastq fastq | 6442858800.0 | 21476196.0 | CK3 1.fq.gz | 0:150 1:150 | A:1709894381;C:1522924138;G:1523272496;T:1686418644;N:349141 | 150 | 150 | 1709894381 | 1522924138 | 1523272496 | 1686418644 | 349141 | SRX13373016 | SRS11277340 | SRA1341542 | Chinese Academy of Sciences|RESEARCH CENTER FOR ECO-ENVIRONMENTAL SCIENCES | Chinese Academy of Sciences | 2 | 0.9629 | 0.94845 | 0.04492 | 0.04355 | 0.73752 | 0.74089 | 0.48412 | 0.48472 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-12-10 | Larval | Larval | Trunk | Surface Structure |