run_metadata: 67530
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67530 | SRR17221757 | SRX13401337 | SRS11304396 | SRP350597 | PRJNA787536 | Danio rerio Raw sequence reads | PRJNA787536 | Other | RNA seq data from adult retina tissue obtained from wild type and cep290 mutant zebrafish at 6 mpf. | cep290 retina 1 | strain:AB/Ekwill hybrid|isolate:Single individual retina|breed:N/A|cultivar:N/A|ecotype:N/A|age:6 mpf stage:Adult|sex:unknown|tissue:Retina|birth date:2020 09 02|collected by:Sarah Grabinski|collection date:2021 04 24|genotype:cep290|Biological replicates:1|BioSampleModel:Model organism or animal | RNA seq of 6 mpf adult zebrafish cep290 mutant retina | GC SG 620 5 | GC SG 620 5 | RNA isolated from single retina prepared using Illumina stranded mRNA kits | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP350597 | GC.SG.620_5_S5_L001_R1_001.fastq.gz GC.SG.620_5_S5_L001_R2_001.fastq.gz | fastq fastq | 38272092466.0 | 126728783.0 | GC.SG.620 5 S5 L001 R1 001.fastq.gz | 0:151 1:151 | A:10830892004;C:8426926025;G:8067309850;T:10946162775;N:801812 | 151 | 151 | 10830892004 | 8426926025 | 8067309850 | 10946162775 | 801812 | SRX13401337 | SRS11304396 | SRA1342775 | Cleveland Clinic|Ophthalmic Research | Cleveland Clinic | 2 | 0.65684 | 0.64515 | 0.33008 | 0.31832 | 0.78031 | 0.78194 | 0.53178 | 0.53091 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | trueseq | bulk | unknown | unknown | United States | 2021-12-13 | Adult | Adult | Eye | Sensory System |