run_metadata: 67055
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67055 | SRR17026706 | SRX13216732 | SRS11142395 | SRP347573 | PRJNA783180 | Zebrafish Brain | PRJNA783180 | Other | Zebrafish Brain | G | C KO | CK1 | strain:missing|isolate:missing|breed:missing|age:90dpf|sex:male|tissue:Brain|biomaterial provider:missing|birth date:missing|birth location:missing|breeding history:missing|breeding method:missing|cell line:missing|cell subtype:missing|cell type:missing|collected by:missing|collection date:missing|culture collection:missing|death date:missing|disease:missing|disease stg:missing|genotype:missing|geo loc name:missing|growth protocol:missing|health state:missing|isolation source:missing|lat lon:missing|phenotype:missing|sample type:missing|specimen voucher:missing|store cond:missing|stud book number:missing|treatment:missing|replicate:replicate = biological replicate 7|BioSampleModel:Model organism or animal | Zebrafish Brain | CK1 | CK1 | Sex | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP347573 | CK1_R1.fastq.gz CK1_R2.fastq.gz | fastq fastq | 6970012926.0 | 23079513.0 | CK1 R1.fastq.gz | 0:151 1:151 | A:1881234941;C:1605828944;G:1630994283;T:1851938444;N:16314 | 151 | 151 | 1881234941 | 1605828944 | 1630994283 | 1851938444 | 16314 | SRX13216732 | SRS11142395 | SRA1334340 | Chinese Academy of Sciences|Institute of Hydrology | Chinese Academy of Sciences | 2 | 0.93953 | 0.93921 | 0.07632 | 0.07583 | 0.71853 | 0.71859 | 0.49982 | 0.50306 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2021-11-24 | Adult | Adult | Brain | Nervous System |