run_metadata: 67012
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67012 | SRR16972432 | SRX13163294 | SRS11094636 | SRP346689 | PRJNA781427 | RNA Seq analysis of wild type and chs1 / zebrafish gut | PRJNA781427 | Other | To investigate the mRNA expression profiles in the intestine of wild type and chitin synthase 1 knock out chs1 / zebrafish extracted total RNA of intestine from samples of different ages to generate cDNA libraries and sequenced using Illumina NovaSeq 6000 system platform. | WT 6M | breed:TU|age:6 mpf|dev stage:Adult|sex:not collected|tissue:Intestine|birth date:2021 01 21|collection date:2021 07 09|death date:2021 07 09|genotype:wild type|health state:health|sample type:tissue sample|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: adult gut | WT 6M rep2 | WT 6M rep2 | Adults Danio rerio were euthanized by MS 222 whole intestines were collected from the abdomen region. Total RNA was extracted using TRIzol Plus RNA Purification Kit. cDNA libraries were generated by Oligo dT for sequencing. | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP346689 | Daniorerio_6months_WT2-02T0001_good_1.fq.gz Daniorerio_6months_WT2-02T0001_good_2.fq.gz Daniorerio_6months_WT2_add-02T0001_good_1.fq.gz Daniorerio_6months_WT2_add-02T0001_good_2.fq.gz | fastq fastq fastq fastq | 17304877338.0 | 58005868.0 | Daniorerio 6months WT2 02T0001 good 1.fq.gz | 0:149.16 1:149.16 | A:4567317204;C:4029770990;G:4089916090;T:4617621274;N:251780 | 149 | 149 | 4567317204 | 4029770990 | 4089916090 | 4617621274 | 251780 | SRX13163294 | SRS11094636 | SRA1330971 | Sun Yat-sen University|School of Life Sciences | Sun Yat-sen University | 2 | 0.9417 | 0.94125 | 0.04903 | 0.04882 | 0.74594 | 0.74675 | 0.52815 | 0.52403 | 140 | 140 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-11-18 | Adult | Adult | Gut | Digestive System |