run_metadata: 66717
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66717 | SRR16388449 | SRX12665886 | SRS10618102 | SRP341856 | PRJNA772154 | Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells | PRJNA772154 | Other | We used zebrafish liver cells to establish ferroptosis model to explore the effect of 1 25OH2D3 on cell ferroptosis and its mechanism of action. The objective of this study was to investigate whether 1 25OH2D3 inhibits RSL3 induced ferroptosis in zebrafish liver cells by means of the Keap1 Nrf2 GPx4 and NF kappa B hepcidin axis. | Ctrl group1 | Ctrl1 | isolate:not applicable|dev stage:78h|sex:not applicable|tissue:liver cell line|id:1|BioSampleModel:Model organism or animal | Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells | Ctrl1 | Ctrl1 | Zebrafish liver cells were cultured in normal medium for 72h and then stimulated with RSL3 for 6 h | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP341856 | ctrl1.R1.raw.fastq.gz ctrl1.R2.raw.fastq.gz | fastq fastq | 6981192966.0 | 23116533.0 | ctrl1.R1.raw.fastq.gz | 0:151 1:151 | A:1775334598;C:1706780136;G:1746486836;T:1752547922;N:43474 | 151 | 151 | 1775334598 | 1706780136 | 1746486836 | 1752547922 | 43474 | SRX12665886 | SRS10618102 | SRA1312474 | Huazhong Agriculture University|College of fisheries | Huazhong Agriculture University | 2 | 0.91804 | 0.91751 | 0.03131 | 0.03133 | 0.80405 | 0.80381 | 0.51561 | 0.52372 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-10-18 | Larval | Larval | Liver | Liver and Biliary System |