run_metadata: 66716
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66716 | SRR16388448 | SRX12665887 | SRS10618103 | SRP341856 | PRJNA772154 | Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells | PRJNA772154 | Other | We used zebrafish liver cells to establish ferroptosis model to explore the effect of 1 25OH2D3 on cell ferroptosis and its mechanism of action. The objective of this study was to investigate whether 1 25OH2D3 inhibits RSL3 induced ferroptosis in zebrafish liver cells by means of the Keap1 Nrf2 GPx4 and NF kappa B hepcidin axis. | Ctrl group2 | Ctrl2 | isolate:not applicable|dev stage:78h|sex:not applicable|tissue:liver cell line|id:2|BioSampleModel:Model organism or animal | Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells | Ctrl2 | Ctrl2 | Zebrafish liver cells were cultured in normal medium for 72h and then stimulated with RSL3 for 6 h | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP341856 | ctrl.2.R2.raw.fastq.gz ctrl.2.R1.raw.fastq.gz | fastq fastq | 6734221594.0 | 22298747.0 | ctrl.2.R1.raw.fastq.gz | 0:151 1:151 | A:1659423115;C:1702751284;G:1747325583;T:1624676257;N:45355 | 151 | 151 | 1659423115 | 1702751284 | 1747325583 | 1624676257 | 45355 | SRX12665887 | SRS10618103 | SRA1312474 | Huazhong Agriculture University|College of fisheries | Huazhong Agriculture University | 2 | 0.97027 | 0.97042 | 0.01507 | 0.01522 | 0.85048 | 0.8506 | 0.52102 | 0.52865 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-10-18 | Larval | Larval | Liver | Liver and Biliary System |