run_metadata: 66715
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66715 | SRR16388447 | SRX12665888 | SRS10618104 | SRP341856 | PRJNA772154 | Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells | PRJNA772154 | Other | We used zebrafish liver cells to establish ferroptosis model to explore the effect of 1 25OH2D3 on cell ferroptosis and its mechanism of action. The objective of this study was to investigate whether 1 25OH2D3 inhibits RSL3 induced ferroptosis in zebrafish liver cells by means of the Keap1 Nrf2 GPx4 and NF kappa B hepcidin axis. | Ctrl group3 | Ctrl3 | isolate:not applicable|dev stage:78h|sex:not applicable|tissue:liver cell line|id:3|BioSampleModel:Model organism or animal | Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells | Ctrl3 | Ctrl3 | Zebrafish liver cells were cultured in normal medium for 72h and then stimulated with RSL3 for 6 h | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP341856 | ctrl3.R1.raw.fastq.gz ctrl3.R2.raw.fastq.gz | fastq fastq | 6375132722.0 | 21109711.0 | ctrl3.R1.raw.fastq.gz | 0:151 1:151 | A:1568066061;C:1611914617;G:1659123863;T:1535989779;N:38402 | 151 | 151 | 1568066061 | 1611914617 | 1659123863 | 1535989779 | 38402 | SRX12665888 | SRS10618104 | SRA1312474 | Huazhong Agriculture University|College of fisheries | Huazhong Agriculture University | 2 | 0.97096 | 0.97074 | 0.01508 | 0.01511 | 0.84624 | 0.84559 | 0.5361 | 0.53476 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-10-18 | Larval | Larval | Liver | Liver and Biliary System |