run_metadata: 66713
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66713 | SRR16388445 | SRX12665890 | SRS10618106 | SRP341856 | PRJNA772154 | Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells | PRJNA772154 | Other | We used zebrafish liver cells to establish ferroptosis model to explore the effect of 1 25OH2D3 on cell ferroptosis and its mechanism of action. The objective of this study was to investigate whether 1 25OH2D3 inhibits RSL3 induced ferroptosis in zebrafish liver cells by means of the Keap1 Nrf2 GPx4 and NF kappa B hepcidin axis. | VD group2 | VD2 | isolate:not applicable|dev stage:78h|sex:not applicable|tissue:liver cell line|id:5|BioSampleModel:Model organism or animal | Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells | VD2 | VD2 | Zebrafish liver cells were cultured in 1 25OH2D3 medium for 72h and then stimulated with RSL3 for 6 h | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP341856 | VD2.R1.raw.fastq.gz VD2.R2.raw.fastq.gz | fastq fastq | 6530177106.0 | 21623103.0 | VD2.R1.raw.fastq.gz | 0:151 1:151 | A:1644196315;C:1615355341;G:1655706450;T:1614879178;N:39822 | 151 | 151 | 1644196315 | 1615355341 | 1655706450 | 1614879178 | 39822 | SRX12665890 | SRS10618106 | SRA1312474 | Huazhong Agriculture University|College of fisheries | Huazhong Agriculture University | 2 | 0.9624 | 0.96201 | 0.02624 | 0.02664 | 0.82639 | 0.82595 | 0.54138 | 0.54722 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-10-18 | Larval | Larval | Liver | Liver and Biliary System |