run_metadata: 66712
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66712 | SRR16388444 | SRX12665891 | SRS10618107 | SRP341856 | PRJNA772154 | Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells | PRJNA772154 | Other | We used zebrafish liver cells to establish ferroptosis model to explore the effect of 1 25OH2D3 on cell ferroptosis and its mechanism of action. The objective of this study was to investigate whether 1 25OH2D3 inhibits RSL3 induced ferroptosis in zebrafish liver cells by means of the Keap1 Nrf2 GPx4 and NF kappa B hepcidin axis. | VD group3 | VD3 | isolate:not applicable|dev stage:78h|sex:not applicable|tissue:liver cell line|id:6|BioSampleModel:Model organism or animal | Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells | VD3 | VD3 | Zebrafish liver cells were cultured in 1 25OH2D3 medium for 72h and then stimulated with RSL3 for 6 h | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP341856 | VD3.R1.raw.fastq.gz VD3.R2.raw.fastq.gz | fastq fastq | 6220654588.0 | 20598194.0 | VD3.R1.raw.fastq.gz | 0:151 1:151 | A:1552134393;C:1550343756;G:1593562676;T:1524575841;N:37922 | 151 | 151 | 1552134393 | 1550343756 | 1593562676 | 1524575841 | 37922 | SRX12665891 | SRS10618107 | SRA1312474 | Huazhong Agriculture University|College of fisheries | Huazhong Agriculture University | 2 | 0.96344 | 0.96379 | 0.0221 | 0.022 | 0.831 | 0.83112 | 0.53864 | 0.54201 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-10-18 | Larval | Larval | Liver | Liver and Biliary System |