run_metadata: 66711
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66711 | SRR16378895 | SRX12656336 | SRS10609554 | SRP341786 | PRJNA772011 | Spatial transcriptome of zebrafish trunk section | PRJNA772011 | Other | Spatial transcriptome sequencing data from sections of adult and larvae zebrafish trunk. Aiming to delineate the distribution of fast and slow muscle fibers in zebrafish by transcriptomic patterns and the regulation of muscle growth. | zebrafish aged | strain:Riken wide type|age:8 month|sex:male|tissue:muscle|birth location:Tokyo Japan|collection date:2020 08 20|BioSampleModel:Model organism or animal | RNA seq of Danio rerio: adult male muscle | zebrafish aged | zebrafish aged | Visium spatial transcriptomics | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP341786 | zebra_aged_S2_L004_R1_001.fastq zebra_aged_S2_L004_R2_001.fastq | fastq fastq | 21508079126.0 | 182271857.0 | zebra aged S2 L004 R1 001.fastq | 0:28 1:90 | A:6446039227;C:4838400089;G:4527284151;T:5696286768;N:68891 | 28 | 90 | 6446039227 | 4838400089 | 4527284151 | 5696286768 | 68891 | SRX12656336 | SRS10609554 | SRA1312274 | The University of Tokyo|Graduate School of Agriculture and Life Science | The University of Tokyo | 2 | 0.00207 | 0.89769 | 0.00073 | 0.03196 | 0.99736 | 0.89688 | 0.49411 | 0.40762 | 28 | 90 | T | B | sc-like readlen | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | Japan | 2021-10-17 | Adult | Adult | Muscle | Muscular System |