run_metadata: 66710
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66710 | SRR16378894 | SRX12656337 | SRS10609555 | SRP341786 | PRJNA772011 | Spatial transcriptome of zebrafish trunk section | PRJNA772011 | Other | Spatial transcriptome sequencing data from sections of adult and larvae zebrafish trunk. Aiming to delineate the distribution of fast and slow muscle fibers in zebrafish by transcriptomic patterns and the regulation of muscle growth. | zebrafish larvae | strain:Riken wide type|age:1 month|sex:not applicable|tissue:muscle|birth location:Tokyo Japan|collection date:2020 08 20|BioSampleModel:Model organism or animal | RNA seq of Danio rerio: larvae muscle | zebrafish larva | zebrafish larva | Visium spatial transcriptomics | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP341786 | zebra_young_S1_L004_R1_001.fastq zebra_young_S1_L004_R2_001.fastq | fastq fastq | 2755287020.0 | 23349890.0 | zebra young S1 L004 R1 001.fastq | 0:28 1:90 | A:775062912;C:621131964;G:654720744;T:704362634;N:8766 | 28 | 90 | 775062912 | 621131964 | 654720744 | 704362634 | 8766 | SRX12656337 | SRS10609555 | SRA1312274 | The University of Tokyo|Graduate School of Agriculture and Life Science | The University of Tokyo | 2 | 0.00167 | 0.91629 | 0.0005 | 0.02744 | 0.99707 | 0.85989 | 0.57777 | 0.51307 | 28 | 90 | T | B | sc-like readlen | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | Japan | 2021-10-17 | Juvenile | Juvenile | Muscle | Muscular System |