run_metadata: 66136
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66136 | SRR15927802 | SRX12217965 | SRS10194168 | SRP337553 | PRJNA764015 | Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish | PRJNA764015 | Other | the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure | replicate4 | 9MPa Muscle 4 | strain:41|dev stage:adult|sex:female|tissue:Muscle|treatment:9MPa4h|BioSampleModel:Model organism or animal | 9MPa Muscle 4 | 9MPa Muscle 4 | 9MPa Muscle 4 | 9MPa4h | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP337553 | 9MPa_Muscle_4_1.fq.gz 9MPa_Muscle_4_2.fq.gz | fastq fastq | 6353225700.0 | 21177419.0 | 9MPa Muscle 4 1.fq.gz | 0:150 1:150 | A:1715999863;C:1474644800;G:1480968914;T:1681582526;N:29597 | 150 | 150 | 1715999863 | 1474644800 | 1480968914 | 1681582526 | 29597 | SRX12217965 | SRS10194168 | SRA1295954 | Northwestern Polytechnical University|School of Ecology and Environment | Northwestern Polytechnical University | 2 | 0.96003 | 0.95939 | 0.0494 | 0.04931 | 0.82619 | 0.82641 | 0.55004 | 0.54769 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-09-17 | Adult | Adult | Muscle | Muscular System |