run_metadata: 66084
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66084 | SRR15871420 | SRX12162463 | SRS10140796 | SRP336826 | PRJNA762494 | Transcriptomes analysis of ercc2/xpd mutant zebrafish | PRJNA762494 | Other | to reveal transcriptional changes in ercc2/xpd mutant zerbafish. | KO D5 2 | replicate:biological replicate k5 2|isolate:zerafish|age:5 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal | RNA Seq of zebrafish larvae | KO D5 2 | KO D5 2 | transcriptional alterations | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP336826 | KO_D5_2_1.fq.gz KO_D5_2_2.fq.gz | fastq fastq | 6417654300.0 | 21392181.0 | KO D5 2 1.fq.gz | 0:150 1:150 | A:1681822871;C:1535820144;G:1530474850;T:1669458576;N:77859 | 150 | 150 | 1681822871 | 1535820144 | 1530474850 | 1669458576 | 77859 | SRX12162463 | SRS10140796 | SRA1293390 | Fudan University|School of Life Sciences | Fudan University | 2 | 0.9556 | 0.96286 | 0.05823 | 0.05872 | 0.6886 | 0.68793 | 0.45207 | 0.46254 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2021-09-13 | Larval | Larval | Whole Organism | All anatomical structures |