run_metadata: 66079
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66079 | SRR15871415 | SRX12162468 | SRS10140800 | SRP336826 | PRJNA762494 | Transcriptomes analysis of ercc2/xpd mutant zebrafish | PRJNA762494 | Other | to reveal transcriptional changes in ercc2/xpd mutant zerbafish. | KO D7 2 | replicate:biological replicate k7 2|isolate:zerafish|age:7 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal | RNA Seq of zebrafish larvae | KO D7 2 | KO D7 2 | transcriptional alterations | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP336826 | KO_D7_2_1.fq.gz KO_D7_2_2.fq.gz | fastq fastq | 6906283500.0 | 23020945.0 | KO D7 2 1.fq.gz | 0:150 1:150 | A:1806100396;C:1655792967;G:1653970800;T:1790324829;N:94508 | 150 | 150 | 1806100396 | 1655792967 | 1653970800 | 1790324829 | 94508 | SRX12162468 | SRS10140800 | SRA1293390 | Fudan University|School of Life Sciences | Fudan University | 2 | 0.95959 | 0.95935 | 0.05687 | 0.05667 | 0.69171 | 0.69059 | 0.45811 | 0.45082 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2021-09-13 | Larval | Larval | Whole Organism | All anatomical structures |