run_metadata: 66074
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66074 | SRR15871410 | SRX12162473 | SRS10140804 | SRP336826 | PRJNA762494 | Transcriptomes analysis of ercc2/xpd mutant zebrafish | PRJNA762494 | Other | to reveal transcriptional changes in ercc2/xpd mutant zerbafish. | sib D7 1 | replicate:biological replicate s7 1|isolate:zerafish|age:7 dpf|sex:not collected|tissue:whole larva|BioSampleModel:Model organism or animal | RNA Seq of zebrafish larvae | sib D7 1 | sib D7 1 | transcriptional alterations | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP336826 | sib_D7_1_1.fq.gz sib_D7_1_2.fq.gz | fastq fastq | 6744360000.0 | 22481200.0 | sib D7 1 1.fq.gz | 0:150 1:150 | A:1747659521;C:1633189382;G:1626351046;T:1737068132;N:91919 | 150 | 150 | 1747659521 | 1633189382 | 1626351046 | 1737068132 | 91919 | SRX12162473 | SRS10140804 | SRA1293390 | Fudan University|School of Life Sciences | Fudan University | 2 | 0.96643 | 0.96697 | 0.04953 | 0.04987 | 0.71226 | 0.71129 | 0.46536 | 0.46559 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2021-09-13 | Larval | Larval | Whole Organism | All anatomical structures |