run_metadata: 65991
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65991 | SRR15859828 | SRX12150930 | SRS10130021 | SRP336743 | PRJNA760976 | Danio rerio strain:AB Transcriptome or Gene expression | PRJNA760976 | Transcriptome Analysis | we investigated the effects of progestins on gonadal differentiation and sex determination in zebrafish | dydrogesterone treatment | DDG 4 | AI | strain:not collected2|isolate:whole fish8|breed:not collected|cultivar:not applicable3|ecotype:not applicable4|age:4 weeks|dev stage:not applicable5|sex:missing|tissue:whole fish|replicate:'replicate = biological replicate 4'|BioSampleModel:Model organism or animal | DDG 4 | BH | BH | zebraifsh exposure | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | BGISEQ | BGISEQ-500 | SRP336743 | 100_4_R1.clean.fq.gz 100_4_R2.clean.fq.gz | fastq fastq | 7014679884.0 | 23437449.0 | 100 4 R1.clean.fq.gz | 0:149.72 1:149.57 | A:1882114669;C:1625037935;G:1641102139;T:1865959279;N:465862 | 149 | 149 | 1882114669 | 1625037935 | 1641102139 | 1865959279 | 465862 | SRX12150930 | SRS10130021 | SRA1291484 | South China Normal University|School of Environment | South China Normal University | 2 | 0.93236 | 0.93264 | 0.08797 | 0.08919 | 0.67574 | 0.67965 | 0.50279 | 0.495 | 150 | 150 | B | B | biological fallback assumption | bgi | bgi | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-09-12 | Larval | Larval | Whole Organism | All anatomical structures |