run_metadata: 65879
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65879 | SRR15684064 | SRX11980366 | SRS9988544 | SRP335145 | PRJNA758770 | Danio rerio Raw sequence reads | PRJNA758770 | Whole Genome Sequencing | A polyfluorinated compound H PFMO2OSA induced transcriptome alters in early zebrafish embryo | PFVE80 4.R2 | strain:AB|age:120h|sex:N1|tissue:embyo|treatment:PFVE 4.2|BioSampleModel:Model organism or animal | RNA Seq of embryo | SAMN21035691 | SAMN21035691 | Illumina NovaSeq 6000 | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | SINGLE | ILLUMINA | Illumina NovaSeq 6000 | SRP335145 | PFVE80_4.R2.fastq.gz | fastq | 3525791110.0 | 23349610.0 | PFVE80 4.R2.fastq.gz | 0:0 1:151 | A:962908653;C:796116922;G:823506287;T:943223019;N:36229 | 0 | 151 | 962908653 | 796116922 | 823506287 | 943223019 | 36229 | SRX11980366 | SRS9988544 | SRA1287281 | Chinese Academy of Sciences|Institute of Zoology | Chinese Academy of Sciences | 1 | 0.93487 | 0.10192 | 0.68193 | 0.48466 | 151 | B | usable mapping rate | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-09-01 | Larval | Larval | Embryo Imprecise | All anatomical structures |