run_metadata: 65848
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65848 | SRR15646747 | SRX11943791 | SRS9954422 | SRP334349 | PRJNA758122 | Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia | PRJNA758122 | Other | To explore Pathological Features of Klebsiella pneumonia | rank8dpf | isolate:Fresh tea leaves|age:17 day post budding|sex:neuter|tissue:zebrafish|BioSampleModel:Model organism or animal | Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia | rank8dpf | rank8dpf | zebrafish larvae | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP334349 | loader:fastq load.py | rank8dpf_1.fq.gz rank8dpf_2.fq.gz | fastq fastq | 14948205900.0 | 49827353.0 | rank8dpf 1.fq.gz | 0:150 1:150 | A:4081087088;C:3398045812;G:3350184197;T:4114230703;N:4658100 | 150 | 150 | 4081087088 | 3398045812 | 3350184197 | 4114230703 | 4658100 | SRX11943791 | SRS9954422 | SRA1284498 | The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University|Department of Laboratory Medicine | The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University | 2 | 0.95 | 0.94168 | 0.11009 | 0.10893 | 0.6718 | 0.67598 | 0.47481 | 0.46639 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-08-30 | Larval | Larval | Undetermined | Undetermined |