run_metadata: 65698
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65698 | SRR15521462 | SRX11820219 | SRS9834714 | SRP333177 | PRJNA756054 | the liver of the adult male zebrafish transcriptome | PRJNA756054 | Other | RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish | AB AL 2 | breed:AB ZFIN ID: ZDB GENO 960809 8|age:1 year|sex:male|tissue:liver|genotype:WT|sample type:total RNA|BioSampleModel:Model organism or animal | RNA seq of Danio rerio:adult male liver | AB AL 2 | AB AL 2 | common method | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP333177 | AB_AL_2_1.fq.gz AB_AL_2_2.fq.gz | fastq fastq | 6809423400.0 | 22698078.0 | AB AL 2 1.fq.gz | 0:150 1:150 | A:1795191417;C:1617821913;G:1618307871;T:1777198137;N:904062 | 150 | 150 | 1795191417 | 1617821913 | 1618307871 | 1777198137 | 904062 | SRX11820219 | SRS9834714 | SRA1280416 | Zhejiang University|College of Animal Sciences | Zhejiang University | 2 | 0.95733 | 0.95785 | 0.02711 | 0.02704 | 0.83512 | 0.83433 | 0.55846 | 0.5213 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-08-19 | Adult | Adult | Liver | Liver and Biliary System |