run_metadata: 65649
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65649 | SRR15458888 | SRX11758243 | SRS9777783 | SRP332539 | PRJNA754591 | Next Generation Sequencing Facilitates Quantitative Analysis of Uncut and Injured Larval Zebrafish Fin Fold Transcriptomes | GSE182113 | Transcriptome Analysis | We report increased expression of mitochondrial biogenesis genes in regnerating larval fin fold Overall design: Larval fin fold mRNA profiles of 3 dpf control and fin amputated zebrafish | pubmed:34622167 | 4hpa rep2 | GSM5518680 | source name:larval fin fold|tissue:larval fin fold|treatment:4h post amputation | 4hpa rep2 | Tophat and Cufflinks DESeq2 Differential Analysis in R Supplementary files format and content: raw count and normalized counts | larval fin fold | Fin folds were collected in cold PBS and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit Cat#FC 122 1001 was used with 1 ug of total RNA for the construction of sequencing libraries. TruSeq RNA Library Prep Kit v2 Illumina | tissue:larval fin fold|treatment:4h post amputation | GSM5518680 | GSM5518680: 4hpa rep2; Danio rerio; RNA Seq | GSM5518680 | 1 | Fin folds were collected in cold PBS and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit Cat#FC 122 1001 was used with 1 ug of total RNA for the construction of sequencing libraries. TruSeq RNA Library Prep Kit v2 Illumina | GEO Accession:GSM5518680 | RNA-Seq | TRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | Illumina HiSeq 4000 | SRP332539 | 4hDMSO-2_S7_L008_R1_001.fastq.gz | fastq | 1410871038.0 | 27664138.0 | GSM5518680 r1 | 0:51 1:0 | A:366166995;C:357462752;G:343178962;T:343741181;N:321148 | 51 | 0 | 366166995 | 357462752 | 343178962 | 343741181 | 321148 | SRX11758243 | SRS9777783 | SRA1278109 | GEO | National Tsing-Hua University | 1 | 0.93684 | 0.06834 | 0.71705 | 0.46343 | 51 | B | usable mapping rate | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Taiwan | 2021-08-14 | Larval | Larval | Fin | Surface Structure |