run_metadata: 65648
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65648 | SRR15458889 | SRX11758244 | SRS9777782 | SRP332539 | PRJNA754591 | Next Generation Sequencing Facilitates Quantitative Analysis of Uncut and Injured Larval Zebrafish Fin Fold Transcriptomes | GSE182113 | Transcriptome Analysis | We report increased expression of mitochondrial biogenesis genes in regnerating larval fin fold Overall design: Larval fin fold mRNA profiles of 3 dpf control and fin amputated zebrafish | pubmed:34622167 | 4hpa rep3 | GSM5518681 | source name:larval fin fold|tissue:larval fin fold|treatment:4h post amputation | 4hpa rep3 | Tophat and Cufflinks DESeq2 Differential Analysis in R Supplementary files format and content: raw count and normalized counts | larval fin fold | Fin folds were collected in cold PBS and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit Cat#FC 122 1001 was used with 1 ug of total RNA for the construction of sequencing libraries. TruSeq RNA Library Prep Kit v2 Illumina | tissue:larval fin fold|treatment:4h post amputation | GSM5518681 | GSM5518681: 4hpa rep3; Danio rerio; RNA Seq | GSM5518681 | 1 | Fin folds were collected in cold PBS and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit Cat#FC 122 1001 was used with 1 ug of total RNA for the construction of sequencing libraries. TruSeq RNA Library Prep Kit v2 Illumina | GEO Accession:GSM5518681 | RNA-Seq | TRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | Illumina HiSeq 4000 | SRP332539 | 4hDMSO-3_S11_L008_R1_001.fastq.gz | fastq | 1550745576.0 | 30406776.0 | GSM5518681 r1 | 0:51 1:0 | A:387174249;C:402754112;G:383357587;T:377128496;N:331132 | 51 | 0 | 387174249 | 402754112 | 383357587 | 377128496 | 331132 | SRX11758244 | SRS9777782 | SRA1278109 | GEO | National Tsing-Hua University | 1 | 0.9503 | 0.06384 | 0.71723 | 0.4534 | 51 | B | usable mapping rate | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Taiwan | 2021-08-14 | Larval | Larval | Fin | Surface Structure |