run_metadata: 65628
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65628 | SRR15422693 | SRX11724261 | SRS9753557 | SRP332210 | PRJNA754013 | Gene family evolution underlies cell type diversification in the hypothalamus of teleosts | PRJNA754013 | Other | Single cell sequencing of the hypothalamus and pre optic area of the zebrafish Danio rerio and Mexican tetra Astyanax mexicanus | Danio rerio hypo5 | hypo5 | strain:TLAB|age:Adult|sex:pooled male and female|tissue:Hypothalamus and Pre optic area|replicate:5|BioSampleModel:Model organism or animal | Danio rerio Hypo2 1 | HVV72BGX5 Hypo2 1 | HVV72BGX5 Hypo2 1 | Isolated cells from the hypothalamus and pre optic area | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | cDNA | PAIRED | ILLUMINA | NextSeq 500 | SRP332210 | HVV72BGX5_Hypo2_1_S1_L001_R1_001.fastq.gz HVV72BGX5_Hypo2_1_S1_L001_R2_001.fastq.gz HVV72BGX5_Hypo2_1_S1_L002_R1_001.fastq.gz HVV72BGX5_Hypo2_1_S1_L002_R2_001.fastq.gz HVV72BGX5_Hypo2_1_S1_L003_R1_001.fastq.gz HVV72BGX5_Hypo2_1_S1_L003_R2_001.fastq.gz HVV72BGX5_Hypo2_1_S1_L004_R1_001.fastq.gz HVV72BGX5_Hypo2_1_S1_L004_R2_001.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq | 11903646384.0 | 141710076.0 | HVV72BGX5 Hypo2 1 S1 L001 R1 001.fastq.gz | 0:26 1:58 | A:3466522737;C:2365658688;G:2760621589;T:3290492743;N:20350627 | 26 | 58 | 3466522737 | 2365658688 | 2760621589 | 3290492743 | 20350627 | SRX11724261 | SRS9753557 | SRA1276953 | University Of Basel|Biozentrum | University Of Basel | 2 | 0.01426 | 0.84622 | 0.00543 | 0.30792 | 0.97699 | 0.81442 | 0.40205 | 0.50724 | 26 | 58 | T | B | sc-like readlen | illumina | nextseq | unknown | cdna_unspecified | unknown | sc | single_cell_generic | generic-scrnaseq-only | Switzerland | 2021-08-12 | Adult | Adult | Brain | Nervous System |