run_metadata: 65623
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65623 | SRR15422687 | SRX11724267 | SRS9753562 | SRP332210 | PRJNA754013 | Gene family evolution underlies cell type diversification in the hypothalamus of teleosts | PRJNA754013 | Other | Single cell sequencing of the hypothalamus and pre optic area of the zebrafish Danio rerio and Mexican tetra Astyanax mexicanus | Danio rerio hypo10 | hypo10 | strain:TLAB|age:Adult|sex:pooled male and female|tissue:Hypothalamus and Pre optic area|replicate:10|BioSampleModel:Model organism or animal | Danio rerio Hypo3 2 | HH3WVBGX7 Hypo3 2 | HH3WVBGX7 Hypo3 2 | Isolated cells from the hypothalamus and pre optic area | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | cDNA | PAIRED | ILLUMINA | NextSeq 500 | SRP332210 | HH3WVBGX7_Hypo3_2_S2_L001_R1_001.fastq.gz HH3WVBGX7_Hypo3_2_S2_L001_R2_001.fastq.gz HH3WVBGX7_Hypo3_2_S2_L002_R1_001.fastq.gz HH3WVBGX7_Hypo3_2_S2_L002_R2_001.fastq.gz HH3WVBGX7_Hypo3_2_S2_L003_R1_001.fastq.gz HH3WVBGX7_Hypo3_2_S2_L003_R2_001.fastq.gz HH3WVBGX7_Hypo3_2_S2_L004_R1_001.fastq.gz HH3WVBGX7_Hypo3_2_S2_L004_R2_001.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq | 5406634464.0 | 64364696.0 | HH3WVBGX7 Hypo3 2 S2 L001 R1 001.fastq.gz | 0:26 1:58 | A:1514445384;C:1108968676;G:1210882892;T:1571507599;N:829913 | 26 | 58 | 1514445384 | 1108968676 | 1210882892 | 1571507599 | 829913 | SRX11724267 | SRS9753562 | SRA1276953 | University Of Basel|Biozentrum | University Of Basel | 2 | 0.01052 | 0.87916 | 0.00508 | 0.33946 | 0.98506 | 0.77429 | 0.39801 | 0.51179 | 26 | 58 | T | B | sc-like readlen | illumina | nextseq | unknown | cdna_unspecified | unknown | sc | single_cell_generic | generic-scrnaseq-only | Switzerland | 2021-08-12 | Adult | Adult | Brain | Nervous System |