run_metadata: 65389
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65389 | SRR15090134 | SRX11399999 | SRS9443134 | SRP327684 | PRJNA745176 | 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish | PRJNA745176 | Other | Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity. | Control 1 | isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:Control treatment|replicate:biological replicate 1|BioSampleModel:Model organism or animal | RNA seq of Danio rerio:liver with Control treatment | CK 1 | CK 1 | Transcriptome sequencing of liver tissue isolated from Danio rerio with untreatment | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | BGISEQ | MGISEQ-2000RS | SRP327684 | CK1.1.fq.gz CK1.2.fq.gz | fastq fastq | 5002504200.0 | 33350028.0 | CK1.1.fq.gz | 0:150 1:150 | A:1371483028;C:1118930644;G:1125887754;T:1386162333;N:40441 | 150 | 150 | 1371483028 | 1118930644 | 1125887754 | 1386162333 | 40441 | SRX11399999 | SRS9443134 | SRA1257080 | China Agricultural University|Department of Applied Chemistry, College of Scienc | China Agricultural University | 1 | 0.90179 | 0.03287 | 0.75349 | 0.49689 | 150 | B | usable mapping rate | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-07-09 | Adult | Adult | Liver | Liver and Biliary System |