run_metadata: 65384
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65384 | SRR15090129 | SRX11400004 | SRS9443139 | SRP327684 | PRJNA745176 | 5 aminolevulinic acid alleviates alpha cypermethrin toxicity in the liver intestine axis in zebrafish | PRJNA745176 | Other | Transcriptome sequencing of liver tissue shows that ALA rescues the differential gene expression on the oxidation reduction heme metabolism and complement activation pathways associated with alpha CP toxicity. | a CP 2 | isolate:Zebrafish Wildtype Lines|age:3 month|sex:not collected|tissue:liver|treatment:α cypermethrin α CP single treatment|replicate:biological replicate 2|BioSampleModel:Model organism or animal | RNA seq of Danio rerio:liver with cypermethrin CP single treatment | CP2 | CP2 | Transcriptome sequencing of liver tissue isolated from Danio rerio with cypermethrin CP single treatment | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | BGISEQ | MGISEQ-2000RS | SRP327684 | CP2.1.fq.gz CP2.2.fq.gz | fastq fastq | 6816619800.0 | 45444132.0 | CP2.1.fq.gz | 0:150 1:150 | A:1891684962;C:1501309861;G:1520270555;T:1903228215;N:126207 | 150 | 150 | 1891684962 | 1501309861 | 1520270555 | 1903228215 | 126207 | SRX11400004 | SRS9443139 | SRA1257080 | China Agricultural University|Department of Applied Chemistry, College of Scienc | China Agricultural University | 1 | 0.90339 | 0.05682 | 0.74272 | 0.4834 | 150 | B | usable mapping rate | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-07-09 | Adult | Adult | Liver | Liver and Biliary System |