run_metadata: 64408
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64408 | SRR14693494 | SRX11031597 | SRS9102414 | SRP322002 | PRJNA733995 | Transcriptome of zebrafish | PRJNA733995 | Other | Transcriptomic responses in the liver of zebrafish exposed to 0 5 10 and 20 ug/L | 4Replicate 1: Zebrafish was exposed to 5 ug/L cadmium water. | L 5ul 1 | 5ug Cd 1 | strain:AB line|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:62 days|dev stage:adult|sex:missing|tissue:Liver|treatment:4|BioSampleModel:Model organism or animal | zebrafish to Cd change | L 5ug 1 | L 5ug 1 | Replicate 1: Zebrafish was exposed to 5 ug/L cadmium water. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | HiSeq X Ten | SRP322002 | L-5-1_1.fq.gz L-5-1_2.fq.gz | fastq fastq | 9511116000.0 | 31703720.0 | L 5 1 1.fq.gz | 0:150 1:150 | A:2522646698;C:2260594111;G:2228650384;T:2499094495;N:130312 | 150 | 150 | 2522646698 | 2260594111 | 2228650384 | 2499094495 | 130312 | SRX11031597 | SRS9102414 | SRA1238751 | Zhejiang Ocean University|School of Marine Science and Technology | Zhejiang Ocean University | 2 | 0.92788 | 0.92717 | 0.02999 | 0.03034 | 0.83126 | 0.8351 | 0.33408 | 0.32916 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2021-05-31 | Multi-stage | Multi-stage | Liver | Liver and Biliary System |