run_metadata: 64407
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64407 | SRR14693493 | SRX11031598 | SRS9102415 | SRP322002 | PRJNA733995 | Transcriptome of zebrafish | PRJNA733995 | Other | Transcriptomic responses in the liver of zebrafish exposed to 0 5 10 and 20 ug/L | 5Replicate 2: Zebrafish was exposed to 5 ug/L cadmium water. | L 5ul 2 | 5ug Cd 2 | strain:AB line|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:62 days|dev stage:adult|sex:missing|tissue:Liver|treatment:5|BioSampleModel:Model organism or animal | zebrafish to Cd change | L 5ug 2 | L 5ug 2 | Replicate 2: Zebrafish was exposed to 5 ug/L cadmium water. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | HiSeq X Ten | SRP322002 | L-5-2_1.fq.gz L-5-2_2.fq.gz | fastq fastq | 9663058500.0 | 32210195.0 | L 5 2 1.fq.gz | 0:150 1:150 | A:2566225232;C:2292358860;G:2261409980;T:2542931680;N:132748 | 150 | 150 | 2566225232 | 2292358860 | 2261409980 | 2542931680 | 132748 | SRX11031598 | SRS9102415 | SRA1238751 | Zhejiang Ocean University|School of Marine Science and Technology | Zhejiang Ocean University | 2 | 0.9279 | 0.92716 | 0.03066 | 0.03036 | 0.84064 | 0.84469 | 0.29604 | 0.29012 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2021-05-31 | Multi-stage | Multi-stage | Liver | Liver and Biliary System |