run_metadata: 64406
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64406 | SRR14693492 | SRX11031599 | SRS9102416 | SRP322002 | PRJNA733995 | Transcriptome of zebrafish | PRJNA733995 | Other | Transcriptomic responses in the liver of zebrafish exposed to 0 5 10 and 20 ug/L | 6Replicate 3: Zebrafish was exposed to 5 ug/L cadmium water. | L 5ul 3 | 5ug Cd 3 | strain:AB line|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:62 days|dev stage:adult|sex:missing|tissue:Liver|treatment:6|BioSampleModel:Model organism or animal | zebrafish to Cd change | L 5ug 3 | L 5ug 3 | Replicate 3: Zebrafish was exposed to 5 ug/L cadmium water. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | HiSeq X Ten | SRP322002 | L-5-3_1.fq.gz L-5-3_2.fq.gz | fastq fastq | 10510383300.0 | 35034611.0 | L 5 3 1.fq.gz | 0:150 1:150 | A:2780249486;C:2506463997;G:2468678073;T:2754845377;N:146367 | 150 | 150 | 2780249486 | 2506463997 | 2468678073 | 2754845377 | 146367 | SRX11031599 | SRS9102416 | SRA1238751 | Zhejiang Ocean University|School of Marine Science and Technology | Zhejiang Ocean University | 2 | 0.93599 | 0.93675 | 0.02788 | 0.028 | 0.82826 | 0.83134 | 0.3691 | 0.36755 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2021-05-31 | Multi-stage | Multi-stage | Liver | Liver and Biliary System |