run_metadata: 64405
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64405 | SRR14693491 | SRX11031600 | SRS9102418 | SRP322002 | PRJNA733995 | Transcriptome of zebrafish | PRJNA733995 | Other | Transcriptomic responses in the liver of zebrafish exposed to 0 5 10 and 20 ug/L | 7Replicate 1: Zebrafish was exposed to 10 ug/L cadmium water. | L 10ul 1 | 10ug Cd 1 | strain:AB line|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:62 days|dev stage:adult|sex:missing|tissue:Liver|treatment:7|BioSampleModel:Model organism or animal | zebrafish to Cd change | L 10ug 1 | L 10ug 1 | Replicate 1: Zebrafish was exposed to 10 ug/L cadmium water. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | HiSeq X Ten | SRP322002 | L-10-1_1.fq.gz L-10-1_2.fq.gz | fastq fastq | 9953955000.0 | 33179850.0 | L 10 1 1.fq.gz | 0:150 1:150 | A:2634231234;C:2372235006;G:2336820401;T:2610532208;N:136151 | 150 | 150 | 2634231234 | 2372235006 | 2336820401 | 2610532208 | 136151 | SRX11031600 | SRS9102418 | SRA1238751 | Zhejiang Ocean University|School of Marine Science and Technology | Zhejiang Ocean University | 2 | 0.93022 | 0.93036 | 0.02647 | 0.02638 | 0.82528 | 0.82893 | 0.35069 | 0.34799 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2021-05-31 | Multi-stage | Multi-stage | Liver | Liver and Biliary System |