run_metadata: 64388
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64388 | SRR14679150 | SRX11017525 | SRS9089834 | SRP321802 | PRJNA733247 | Danio rerio breed:Danio Raw sequence reads | PRJNA733247 | Whole Genome Sequencing | zebrafish muscle tissue for scRNA seq and bulk RNA seq | Model organism or animal sample from Danio rerio | zebrafish | breed:Danio|dev stage:60 day|sex:missing|tissue:muscle|BioSampleModel:Model organism or animal | scRNA seq | runx2b+/+ scRNA seq | runx2b+/+ scRNA seq | tail muscle with intermuscular bone | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | cDNA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP321802 | WT_S1_L003_R1_001.fastq.gz WT_S1_L003_R2_001.fastq.gz | fastq fastq | 99838157100.0 | 332793857.0 | WT S1 L003 R1 001.fastq.gz | 0:150 1:150 | A:30283010374;C:15529232903;G:16181518775;T:37842782328;N:1612720 | 150 | 150 | 30283010374 | 15529232903 | 16181518775 | 37842782328 | 1612720 | SRX11017525 | SRS9089834 | SRA1238123 | Huazhong Agricultural university|Huazhong Agricultural university | Huazhong Agricultural university | 2 | 0.34302 | 0.92611 | 0.04637 | 0.09453 | 0.98701 | 0.83658 | 0.71917 | 0.76074 | 150 | 150 | B | B | mate1-mate2 similar by mapping diff | illumina | novaseq_era | unknown | cdna_unspecified | unknown | sc | bulk | bulk | China | 2021-05-29 | Juvenile | Juvenile | Muscle | Muscular System |