run_metadata: 64385
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64385 | SRR14679147 | SRX11017528 | SRS9089834 | SRP321802 | PRJNA733247 | Danio rerio breed:Danio Raw sequence reads | PRJNA733247 | Whole Genome Sequencing | zebrafish muscle tissue for scRNA seq and bulk RNA seq | Model organism or animal sample from Danio rerio | zebrafish | breed:Danio|dev stage:60 day|sex:missing|tissue:muscle|BioSampleModel:Model organism or animal | bulk RNA seq | runx2b+/+ 2 bulk RNA seq | runx2b+/+ 2 bulk RNA seq | tail muscle with intermuscular bone | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP321802 | WT_2_60dpf.R1.fq.gz WT_2_60dpf.R2.fq.gz | fastq fastq | 7007750400.0 | 23359168.0 | WT 2 60dpf.R1.fq.gz | 0:150 1:150 | A:1714498514;C:1702913716;G:1897215939;T:1693105532;N:16699 | 150 | 150 | 1714498514 | 1702913716 | 1897215939 | 1693105532 | 16699 | SRX11017528 | SRS9089834 | SRA1238123 | Huazhong Agricultural university|Huazhong Agricultural university | Huazhong Agricultural university | 2 | 0.93184 | 0.92606 | 0.01222 | 0.01169 | 0.84762 | 0.85033 | 0.67174 | 0.64259 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc_generic | bulk | bulk | China | 2021-05-28 | Juvenile | Juvenile | Muscle | Muscular System |