run_metadata: 64375

This data as json

rowid	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.treatmentprotocol	GEOsample.extractprotocol	GEOsample.growthprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.r3_length	run.r4_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	tech_variant	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
64375	SRR14573850	SRX10917054	SRS9007191	SRP320241	PRJNA730648	Zebrafish liver transcriptome post DPHP exposure	PRJNA730648	Other	RNA seq data of adult zebrafish post exposure to DPHP			Three replications were sampled.	RNA Seq data of female zebrafish liver middle dose	RNA Seq data of female zebrafish liver middle dose		strain:AB strain\|isolate:multi individual\|breed:Hatchery\|age:Adult\|sex:female\|tissue:Liver\|treatment:10 µg/L DPHP\|BioSampleModel:Model organism or animal									RNA Seq data of female zebrafish liver middle dose	RNA Seq data of female zebrafish liver middle dose	RNA Seq data of female zebrafish liver middle dose	Livers from three randomly selected zebrafish in 0 10 and 100 g/L exposure groups were used for transcriptomics analysis. The cDNA library was constructed with TruseqTM RNA sample prep Kit Illumina and then next generation sequencing was performed on an Illumina HiSeq platform. Three replicates per treatment.			RNA-Seq	TRANSCRIPTOMIC	RT-PCR	PAIRED	ILLUMINA	Illumina HiSeq 2000		SRP320241			Y200623_YX20200602501_FL_M1_S23_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_M1_S23_L003_R2_001.fastq.gz Y200623_YX20200602501_FL_M2_S24_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_M2_S24_L003_R2_001.fastq.gz Y200623_YX20200602501_FL_M3_S25_L003_R1_001.fastq.gz Y200623_YX20200602501_FL_M3_S25_L003_R2_001.fastq.gz	fastq fastq fastq fastq fastq fastq	20865076029.0	69309201.0	Y200623 YX20200602501 FL M1 S23 L003 R1 001.fastq.gz	0:150.52 1:150.53	A:5514422779;C:4810621235;G:5041906998;T:5497718997;N:406020	150	150			5514422779	4810621235	5041906998	5497718997	406020	SRX10917054	SRS9007191	SRA1233498	University of Saskatchewan\|Toxicology center	University of Saskatchewan	2	0.95192	0.94893	0.02787	0.02734	0.82838	0.83321	0.17526	0.17514	150	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	other	unknown	bulk	unknown	unknown		Canada	2021-05-18	Adult	Adult	Liver	Liver and Biliary System