run_metadata: 64253
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64253 | SRR14373550 | SRX10725854 | SRS8815706 | SRP318063 | PRJNA726592 | GH overexpression on gonadal microRNAome profile in zebrafish males | PRJNA726592 | Other | Evaluate computationally the kinetic parameters as well as to identify and quantify the set of miRNAs of the spermatozoa from gh transgenic gh+ and non transgenic NT zebrafish that may be correlated with low spermatic quality. | Non transgenic 3 | NT2 | strain:F0104|age:15 month|dev stage:adult|sex:male|tissue:gonadal|biological replicate:2|BioSampleModel:Model organism or animal | miRNA Seq of Danio rerio: adult male gonad | NT2 | NT2 | NEBNext Small RNA Library Prep Set | miRNA-Seq | TRANSCRIPTOMIC | PCR | SINGLE | ILLUMINA | Illumina MiSeq | SRP318063 | PoolUFPEL-NT3.fastq | fastq | 147963750.0 | 2901250.0 | PoolUFPEL NT3.fastq | 0:51 1:0 | A:37528568;C:33498521;G:41979920;T:34953411;N:3330 | 51 | 0 | 37528568 | 33498521 | 41979920 | 34953411 | 3330 | SRX10725854 | SRS8815706 | SRA1226279 | Universidade Federal de Pelotas|CDTec | Universidade Federal de Pelotas | 1 | 0.75277 | 0.34872 | 0.86596 | 0.53154 | 51 | B | usable mapping rate | illumina | miseq | unknown | random_priming | nebnext | bulk | unknown | unknown | Brazil | 2021-04-30 | Adult | Adult | Gonad | Reproductive System |