run_metadata: 64204
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64204 | SRR14319890 | SRX10675028 | SRS8769029 | SRP316198 | PRJNA724884 | Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and terfa compromised zebrafish embryos | PRJNA724884 | Other | The goals of this study are to compare NGS in 3dpf zebrafish embryo post knockout terfa telomere repeats binding factor 2. In order to investigate the role of terfa in DDR telomere protection and neuro development. | yyl wt zf rep1 | replicate:1|date:2/14/2021/9am|breed:AB|age:3 day|dev stage:embryo|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal | RNA Seq of danio rerio: 3d embryos | LDA9522 | LDA9522 | RNA libraries were prepared for sequencing using standard Illumina protocols | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP316198 | WT_3d_1_LDA9522Aligned.sortedByCoord.out.bam | bam | 18010289414.0 | 60034644.0 | WT 3d 1 LDA9522Aligned.sortedByCoord.out.bam | 0:150.00 1:150.00 | A:4584048700;C:4421083340;G:4382775986;T:4621251990;N:1129398 | 150 | 150 | 4584048700 | 4421083340 | 4382775986 | 4621251990 | 1129398 | SRX10675028 | SRS8769029 | SRA1223267 | Ruijin hospital, Shanghai, China|Emergency Medchine | Ruijin hospital, Shanghai, China | 2 | 0.96428 | 0.96501 | 0.06803 | 0.06875 | 0.65458 | 0.65837 | 0.46378 | 0.45821 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-04-29 | Larval | Larval | Embryo Imprecise | All anatomical structures |