run_metadata: 64169
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64169 | SRR14308458 | SRX10663878 | SRS8758298 | SRP315996 | PRJNA724011 | BDE 47 zebrafish 24hpf 4dpf | PRJNA724011 | Other | DD2 | strain:AB23|age:24hpf21|dev stage:24hpf21|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal | AB23 | L23 | L23 | paried end seq | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina MiSeq | SRP315996 | DD2.raw_1.fastq.gz DD2.raw_2.fastq.gz | fastq fastq | 8917386000.0 | 29724620.0 | DD2.raw 1.fastq.gz | 0:150 1:150 | A:2348537193;C:2056372655;G:2265284593;T:2246861797;N:329762 | 150 | 150 | 2348537193 | 2056372655 | 2265284593 | 2246861797 | 329762 | SRX10663878 | SRS8758298 | SRA1222808 | Shantou University|Medical Colleg | Shantou University | 2 | 0.94502 | 0.94397 | 0.09162 | 0.09061 | 0.67444 | 0.67718 | 0.47862 | 0.47594 | 150 | 150 | B | B | biological fallback assumption | illumina | miseq | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-04-27 | Pharyngula | Embryo | Whole Organism | All anatomical structures |