run_metadata: 64168
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64168 | SRR14308457 | SRX10663879 | SRS8758299 | SRP315996 | PRJNA724011 | BDE 47 zebrafish 24hpf 4dpf | PRJNA724011 | Other | DD3 | strain:AB24|age:24hpf21|dev stage:24hpf21|sex:pooled male and female|tissue:wholefish|BioSampleModel:Model organism or animal | AB24 | L24 | L24 | paried end seq | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina MiSeq | SRP315996 | DD3.raw_1.fastq.gz DD3.raw_2.fastq.gz | fastq fastq | 7608806100.0 | 25362687.0 | DD3.raw 1.fastq.gz | 0:150 1:150 | A:2042994601;C:1734375022;G:1812166219;T:2018988826;N:281432 | 150 | 150 | 2042994601 | 1734375022 | 1812166219 | 2018988826 | 281432 | SRX10663879 | SRS8758299 | SRA1222808 | Shantou University|Medical Colleg | Shantou University | 2 | 0.94225 | 0.94109 | 0.10828 | 0.10717 | 0.67436 | 0.6776 | 0.47781 | 0.48362 | 150 | 150 | B | B | biological fallback assumption | illumina | miseq | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-04-27 | Pharyngula | Embryo | Whole Organism | All anatomical structures |