run_metadata: 63830
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63830 | SRR14075704 | SRX10449982 | SRS8581357 | SRP312266 | PRJNA717374 | TBBPA and BPA in zebrafish liver | PRJNA717374 | Other | 11 | T5003 | strain:AB|isolate:11|ecotype:China|age:5 months|sex:male|tissue:liver|BioSampleModel:Model organism or animal | zebrafish liver | 21 | 21 | paired end 150 bp sequencing strategy PE170 on Illumina sequencing platform | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP312266 | T5003_R1.fq.gz T5003_R2.fq.gz | fastq fastq | 7289788200.0 | 24299294.0 | T5003 R1.fq.gz | 0:150 1:150 | A:1967144656;C:1653336932;G:1740636597;T:1928648641;N:21374 | 150 | 150 | 1967144656 | 1653336932 | 1740636597 | 1928648641 | 21374 | SRX10449982 | SRS8581357 | SRA1210832 | China Agricultural University|Science | China Agricultural University | 2 | 0.9404 | 0.94062 | 0.08176 | 0.08109 | 0.78058 | 0.78263 | 0.52125 | 0.51873 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-03-26 | Adult | Adult | Liver | Liver and Biliary System |