run_metadata: 63376
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63376 | SRR13760196 | SRX10146924 | SRS8299540 | SRP307421 | PRJNA703759 | Danio rerio transcriptome analysis | PRJNA703759 | Transcriptome Analysis | Differential analysis of Chlorpyrifos treatment effect in liver tissue | E | Sample E | strain:not applicable|age:5 month|dev stage:Adult|sex:not applicable|tissue:Liver|collected by:Bestha Lakshmi|treatment:Chlorpyrifos|BioSampleModel:Model organism or animal | E | Sample E | Sample E | Total RNA sequencing | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP307421 | F00118317-E_S39_1.fastq.gz F00118317-E_S39_2.fastq.gz | fastq fastq | 4198034352.0 | 13900776.0 | F00118317 E S39 1.fastq.gz | 0:151 1:151 | A:1144870642;C:939226318;G:991368510;T:1122322391;N:246491 | 151 | 151 | 1144870642 | 939226318 | 991368510 | 1122322391 | 246491 | SRX10146924 | SRS8299540 | SRA1198573 | Sri Krishnadevaraya University|Microbiology | Sri Krishnadevaraya University | 2 | 0.6473 | 0.61397 | 0.05462 | 0.0481 | 0.83071 | 0.83609 | 0.45852 | 0.46791 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | India | 2021-02-22 | Adult | Adult | Liver | Liver and Biliary System |