run_metadata: 63228
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63228 | SRR13674931 | SRX10064377 | SRS8226455 | SRP305613 | PRJNA701156 | Zebrafish muscle transcriptome sequencing | PRJNA701156 | Other | RTL1 3 | P5 FRAS192293744 1a | strain:AB|age:90.6 days|sex:male|tissue:muscle|treatment:transgened|BioSampleModel:Model organism or animal | Danio rerio: adult male muscle | P5 | P5 | Total?RNA?was?extracted?from?muscle?tissues?of?transgenic?zebrafish?at?60?and?90?dpf?using?Trizol?reagent?TaKaRa ?JP.?The?RNA?samples?of?control?and?Rtl1?transgenic?zebrafish?at?90?dpf?were?used?for?RNA?sequencing ?which?were?successively?checked?for?purity ?concentration?and?integrity?using?Nanodrop2000 ?Qubit?3.0?and?Agilent?2100?bioanalyzer?respectively.?The?150 bp?and?paired end?libraries?were?prepared?using?the?NEBNext?UltraTM?RNA?Library?Prep?kit?for?Illumina?NEB ?Beijing ?China. | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP305613 | P5_FRAS192293744-1a_1.fq.gz P5_FRAS192293744-1a_2.fq.gz | fastq fastq | 6771953100.0 | 22573177.0 | P5 FRAS192293744 1a 1.fq.gz | 0:150 1:150 | A:1754412294;C:1641284715;G:1642201960;T:1733881630;N:172501 | 150 | 150 | 1754412294 | 1641284715 | 1642201960 | 1733881630 | 172501 | SRX10064377 | SRS8226455 | SRA1194342 | Huazhong Agricultural University|College of Animal Science and Technology | Huazhong Agricultural University | 2 | 0.9658 | 0.96585 | 0.03234 | 0.03214 | 0.81235 | 0.81176 | 0.56443 | 0.56428 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | nebnext | bulk | unknown | unknown | China | 2021-02-10 | Adult | Adult | Muscle | Muscular System |