run_metadata: 63066
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63066 | SRR13587398 | SRX9982089 | SRS8153596 | SRP303929 | PRJNA698005 | Danio rerio Raw sequence reads | PRJNA698005 | Whole Genome Sequencing | Danio rerio Raw RNA sequence reads | Model organism or animal sample from Danio rerio | The liver of Danio rerio | isolate:river|age:adult|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal | 8ZL | 8ZL | 8ZL | The liver experiment repeat 2 of Gobiocypris rarus | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | BGISEQ | BGISEQ-500 | SRP303929 | 8ZL_1.fq.gz 8ZL_2.fq.gz | fastq fastq | 8320145700.0 | 55467638.0 | 8ZL 1.fq.gz | 0:150 1:150 | A:2269869967;C:1877995864;G:1875902564;T:2295652508;N:724797 | 150 | 150 | 2269869967 | 1877995864 | 1875902564 | 2295652508 | 724797 | SRX9982089 | SRS8153596 | SRA1189625 | Center for Ecological and Environmental Sciences|Northwestern Polytechnical University | Center for Ecological and Environmental Sciences | 1 | 0.92304 | 0.06156 | 0.76934 | 0.50603 | 150 | B | usable mapping rate | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-01-30 | Adult | Adult | Liver | Liver and Biliary System |