run_metadata: 63053
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63053 | SRR13587426 | SRX9982119 | SRS8153603 | SRP303929 | PRJNA698005 | Danio rerio Raw sequence reads | PRJNA698005 | Whole Genome Sequencing | Danio rerio Raw RNA sequence reads | Model organism or animal sample from Danio rerio | The gill of Danio rerio | isolate:river|age:adult|sex:not determined|tissue:gill|BioSampleModel:Model organism or animal | 24ZG | 24ZG | 24ZG | The gill control repeat 3 of Danio rerio | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | BGISEQ | BGISEQ-500 | SRP303929 | 24ZG_1.fq.gz 24ZG_2.fq.gz | fastq fastq | 8223747600.0 | 54824984.0 | 24ZG 1.fq.gz | 0:150 1:150 | A:2300974904;C:1808864978;G:1782331401;T:2331317250;N:259067 | 150 | 150 | 2300974904 | 1808864978 | 1782331401 | 2331317250 | 259067 | SRX9982119 | SRS8153603 | SRA1189632 | Center for Ecological and Environmental Sciences|Northwestern Polytechnical University | Center for Ecological and Environmental Sciences | 1 | 0.89723 | 0.1296 | 0.69392 | 0.52375 | 150 | B | usable mapping rate | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-01-30 | Adult | Adult | Gill | Respiratory System |