run_metadata: 63045
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63045 | SRR13613239 | SRX10006651 | SRS8175777 | SRP304325 | PRJNA695802 | zebrafish heart RNA Sequencing | PRJNA695802 | Other | To examine if the MTO1 deficiency changed the gene expression profile for thedevelopment of hypertrophic cardiomyopathy and the deficiency of complex I and IV weperformed mRNA sequencing on hearts of WT and mto1 / zebrafish at the age of 4 month 6 month. | zeMTO1 CKH | strain:zebrafish|isolate:missing|breed:not collected|cultivar:not collected|ecotype:not collected|age:6 month|dev stage:adult|sex:pooled male and female|tissue:Heart|BioSampleModel:Model organism or animal | RNA Seq of danio rerio: adult heart of mtu1 koMT zebrafish | ZQH 1 | ZQH 1 | RNA seq libraries construction and sequencing were performed by the Novogene Bioinformatics Institute Beijing China | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP304325 | M_H_MT1_1.fq.gz M_H_MT1_2.fq.gz M_H_MT2_1.fq.gz M_H_MT2_2.fq.gz M_H_MT3_1.fq.gz M_H_MT3_2.fq.gz | fastq fastq fastq fastq fastq fastq | 28841362200.0 | 96137874.0 | M H MT1 1.fq.gz | 0:150 1:150 | A:7994584981;C:6451934158;G:6529256090;T:7865230473;N:356498 | 150 | 150 | 7994584981 | 6451934158 | 6529256090 | 7865230473 | 356498 | SRX10006651 | SRS8175777 | SRA1190610 | Zhejiang University|Institute of Genetics, Zhejiang University School | Zhejiang University | 2 | 0.93453 | 0.93468 | 0.06855 | 0.0684 | 0.77187 | 0.77183 | 0.51763 | 0.51889 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2021-02-02 | Adult | Adult | Heart | Cardiovascular System |